#Vmd movie maker how to#

When you select the file, you will be back in the Molecule File Browser window. button to find the file ubiquitin.psf in vmd-tutorial-files in the tutorial directory. The Molecule File Browser window should appear on your screen.Ģ Use the Browse. Same molecule, so that VMD has access to both the structure and trajectoryġ Start a new VMD session. Load the structure file, and then add the trajectory data to the

Trajectory files usually do not contain information structural informationĪs found in protein structure files (PSF). The time varying atomic coordinates for the system.Įach set of coordinates corresponds to one frame in time.Īn example of a trajectory file is a DCD file. Trajectory files are typically large binary files that contain

#Vmd movie maker how to#

You will also learn how to analyze trajectory data in This section will introduce the basics of working with trajectory System evolving with time and analyze various structural Upon loading a trajectory, VMD can animate movies of They are most commonly obtained in simulations of molecular systems,īut can also be generated by other means and for different purposes. The time-evolving coordinates of a system are called a trajectory.

Next: Scripting in VMD Up: VMD Tutorial Previous: Working with a Single